Interoperability in the GENESIS 3.0 Software Federation : the NEURON Simulator as an Example

© 2013 Cornelis et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.Poster presented at CNS 2013Non peer reviewe

Optimization of input parameters to a CN neuron model to simulate its activity during and between epileptic absence seizures

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Heat transfer in rotating serpentine passages with selected model orientation for smooth or skewed trip walls

Experiments were conducted to determine the effects of model orientation as well as buoyancy and Coriolis forces on heat transfer in turbine blade internal coolant passages. Turbine blades have internal coolant passage surfaces at the leading and trailing edges of the airfoil with surfaces at angles which are as large as +/- 50 to 60 degrees to the axis of rotation. Most of the previously-presented, multiple-passage, rotating heat transfer experiments have focused on radial passages aligned with the axis of rotation. Results from serpentine passages with orientations 0 and 45 degrees to the axis of rotation which simulate the coolant passages for the mid chord and trailing edge regions of the rotating airfoil are compared. The experiments were conducted with rotation in both directions to simulate serpentine coolant passages with the rearward flow of coolant or with the forward flow of coolant. The experiments were conducted for passages with smooth surfaces and with 45 degree trips adjacent to airfoil surfaces for the radial portion of the serpentine passages. At a typical flow condition, the heat transfer on the leading surfaces for flow outward in the first passage with smooth walls was twice as much for the model at 45 degrees compared to the model at 0 degrees. However, the differences for the other passages and with trips were less. In addition, the effects of buoyancy and Coriolis forces on heat transfer in the rotating passage were decreased with the model at 45 degrees, compared to the results at 0 degrees. The heat transfer in the turn regions and immediately downstream of the turns in the second passage with flow inward and in the third passage with flow outward was also a function of model orientation with differences as large as 40 to 50 percent occurring between the model orientations with forward flow and rearward flow of coolant

Heat transfer in rotating serpentine passages with trips skewed to the flow

Experiments were conducted to determine the effects of buoyancy and Coriolis forces on heat transfer in turbine blade internal coolant passages. The experiments were conducted with a large scale, multi-pass, heat transfer model with both radially inward and outward flow. Trip strips, skewed at 45 deg to the flow direction, were machined on the leading and trailing surfaces of the radial coolant passages. An analysis of the governing flow equations showed that four parameters influence the heat transfer in rotating passages: coolant-to-wall temperature, rotation number, Reynolds number, and radius-to-passage hydraulic diameter ratio. The first three of these four parameters were varied over ranges which are typical of advanced gas turbine engine operating conditions. Results were correlated and compared to previous results from similar stationary and rotating models with smooth walls and with trip strips normal to the flow direction. The heat transfer coefficients on surfaces, where the heat transfer decreased with rotation and buoyancy, decreased to as low as 40 percent of the value without rotation. However, the maximum values of the heat transfer coefficients with high rotation were only slightly above the highest levels previously obtained with the smooth wall models. It was concluded that (1) both Coriolis and buoyancy effects must be considered in turbine blade cooling designs with trip strips, (2) the effects of rotation are markedly different depending upon the flow direction, and (3) the heat transfer with skewed trip strips is less sensitive to buoyancy than the heat transfer in models with either smooth or normal trips. Therefore, skewed trip strips rather than normal trip strips are recommended and geometry-specific tests are required for accurate design information

Combining machine learning and simulations of a morphologically realistic model to study modulation of neuronal activity in cerebellar nuclei

Abstract from 23rd Annual Computational Neuroscience Meeting: CNS 2014 © 2014 Alva et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The Creative Commons Public Domain Dedication waiver (http:// creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.Epileptic absence seizures are characterized by synchronized oscillatory activity in the cerebral cortex that can be recorded as so-called spike-and-wave discharges (SWDs) by electroencephalogram. Although the cerebral cortex and the directly connected thalamus are paramount to this particular form of epilepsy, several other parts of the mammalian brain are likely to influence this oscillatory activity. We have recently shown that some of the cerebellar nuclei (CN) neurons, which form the main output of the cerebellum, show synchronized oscillatory activity during episodes of cortical SWDs in two independent mouse models of absence epilepsy [1]. The CN neurons that show this significant correlation with the SWDs are deemed to “participate” in the seizure activity and are therefore used in our current study designed to unravel the potential causes of such oscillatory firing patternsPeer reviewe

Effects of rotation on coolant passage heat transfer. Volume 1: Coolant passages with smooth walls

An experimental program was conducted to investigate heat transfer and pressure loss characteristics of rotating multipass passages, for configurations and dimensions typical of modern turbine blades. The immediate objective was the generation of a data base of heat transfer and pressure loss data required to develop heat transfer correlations and to assess computational fluid dynamic techniques for rotating coolant passages. Experiments were conducted in a smooth wall large scale heat transfer model

Biogeodynamics of Cretaceous marine carbonate production

We have compiled stratigraphic ranges of genera of calcareous nannofossils, calcispheres, planktonic foraminifers, larger benthic foraminifers, corals and rudists bivalves, and species of dasycladalean green algae. These taxa comprise the main planktonic and benthic carbonate producers of the Cretaceous, a period of exceptionally high sea level and palaeotemperatures that was characterized by unique assemblages of benthic carbonate producers and the significant rise in pelagic carbonate sedimentation. The autecology, physiological control on calcification, and carbonate-production potential of these groups is summarized. The observed diversity patterns are compared with proxy data of Cretaceous climate and seawater chemistry to elucidate the effect of environmental change on carbonate production and sedimentation. Two characteristic patterns are recognized. Diversity of calcareous nannofossils, calcispheres, planktonic foraminifers and corals trace the evolution of Cretaceous sea-level, while the diversity of dasycladalean algae, larger benthic foraminifers, corals and rudist bivalves show significant reductions at the level of oceanic anoxic events (OAEs). Benthic carbonate producers except for corals thus appear to have been more vulnerable to environmental change, and these general patterns appear to be unrelated to the autecology of the taxa investigated. The expansion of suitable habitats during episodes of high sea level and high temperatures appears to have been a more important control of diversity in calcareous nannofossils, planktonic foraminifers, and corals than changes in seawater chemistry. Aragonitic or aragonite-dominated benthic carbonate producers are most affected during extinction events related to OAEs, and there is a general trend of decreasing aragonite dominance throughout the Cretaceous. This is compensated by the extensive formation of calcitic hemipelagic chalk since the Cenomanian. The trend of decreasing aragonite dominance is independent of the level of biological control on calcification in the different taxa affected. The demise of aragonitic or aragonite-dominated carbonate producers at OAE1a (early Aptian) and OAE2 (Cenomanian–Turonian boundary interval) may be related to short episodes of reduced seawater carbonate-saturation caused by short-lived injections of CO2 from large igneous provinces that initiated OAEs. For OAE1a, this scenario also explains the retreat of carbonate platforms to low latitudes in the early Aptian, as sea-surface water typically has a higher carbonate saturation in warm, lower than in cooler, higher latitude waters. The gradual decrease of aragonite throughout the Cretaceous matches model simulations of seawater carbonate-saturation. An increase in the relative number of azooxanthellate coral genera following OAE1a and OAE2 suggests a disruption of photosymbiosis in the course of these global events due to high temperatures. However, the relative numbers of azooxanthellate genera continued to increase during the Late Cretaceous, when global temperatures declined. Due to the short residence time of major nutrients in seawater, these may have affected carbonate-producing ecosystems regionally. The recent patterns of benthic carbonate production being highest in oligotrophic environments cannot confidently be extrapolated to the Cretaceous. Our database records ranges of genera at the substage level. Higher-resolution stratigraphical studies of neritic carbonate sequences are required to understand what aspect of environmental change in the sequences are required to understand what aspect of environmental change in the sequence of events that unfolded in the context of OAEs caused the demise of benthic carbonate producers

Structural plasticity and associative memory in balanced neural networks with spike-time dependent inhibitory plasticity

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Polyethylene Oxide Nanofiber Production by Electrospinning

Electrospinning is an inexpensive technique that is used to produce nanofibers for a variety of applications. In electrospinning, a polymer solution is dispensed from a hypodermic-like syringe where an intense electric field attracts the solution to a collector while drawing the polymer into a very thin fiber. The diameter of the fiber can be controlled by tuning the process parameters such as the applied electric field, solution flow rate, distance between syringe tip and collector, and the collector geometry. In this paper we describe results from electrospinning poly(ethylene oxide) (PEO), a likely candidate for applications involving scaffolding for tissue engineering. The PEO nanofibers were fabricated from different polymer solution concentrations ranging from 14% - 22% (by weight). Each sample was then imaged using a scanning electron microscope. The morphology of the fibers produced from varying solution concentrations is discussed